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I think the easiest option would be to use the parametric analysis utility that CONTAM just released which you could use instead of JEPlus.

That said, if you want to use JEPlus or need to couple CONTAM with EnergyPlus... Did you try following Section 6.1 (EnergyPlus-CONTAM Coupling Process) from the CONTAM User Guide and Program Documentation, Version 2.2? Then you may be able to use JEPlus as usual with an EnergyPlus IDF file.