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Why do you need FLOPS/IOPS as opposed to just wall time? Are you running in a batch environment that matches you to machines based on this information, e.g., Condor?

Either way, I don't think this has been done yet but the most straightforward way to do it would be to write a wrapper for EnergyPlus that resets and then reads the appropriate performance counters. I could probably spin this up in a few hours. Should I? How much will you pay me? ;)