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You can use rvi input files to filter and order the variables from the eso output when ReadVarsESO produces the csv output. You can write a batch script to run ReadVarsESO multiple times on the same eso output, each with a different rvi input. There are many example rvi files in the EnergyPlus ExampleFiles folder, e.g. 1ZoneUncontrolled.rvi. See "Using ReadVarsESO" in the Input Output Reference for more information.