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The Weather Converter Program (often just called Weather) which comes with EnergyPlus is documented here. The program can accept individual weather files to process or a list of files. To process a list of files, create a file with a text editor with the extension .LST and follow the instructions from that link on the specific columns or use of tabs between the input and output file names.

If you are a programmer, an alternative is to use the same DLL that the Weather program uses called EPlusWth.dll which is documented here.