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Matching Surfaces and Intersecting Surfaces problem

hello I am having trouble with matching surfaces and intersecting, if somebody has time to answer, I have 3 story building with different floor geometries, when I intersect everything seems fine, but when rendered by boundary condition it show some yellow surfaces, red surfaces between floors and some gray as well, i do not know what to do in this situation, is there a way I can fix this, and can somebody explain why it keeps happening, i cannot post picture yet. Thanks in advance!!!

Matching Surfaces and Intersecting Surfaces problem

hello I am having trouble with matching surfaces and intersecting, if somebody has time to answer, I have 3 story building with different floor geometries, when I intersect everything seems fine, but when rendered by boundary condition it show some yellow surfaces, red surfaces between floors and some gray as well, i do not know what to do in this situation, is there a way I can fix this, and can somebody explain why it keeps happening, i cannot post picture yet. Thanks in advance!!!