@Adrià González-Esteve, looks like you're comparing:
- E+ reported (centre-of-) Glass U-Factor vs ASHRAE Assembly U-Factor
- E+ reported (centre-of-) Glass SHGC vs ASHRAE Assembly SHGC
Yet the E+ reported Assembly U-factor and Assembly SHGC numbers (in blue) seem to match?

SHGC (25%) has remained pretty constant (at least for fixed fenestration) over several 90.1 editions for CZ < 4. They seem to match here.
Unsure which 90.1 version you're looking into (e.g. 2010?). The E+ reported Assembly U-Factor results seem to match 90.1 2016 requirements (and earlier?) for nonresidential, CZ 3C (once rounded):

Maybe double-check that you're comparing the same 90.1 versions (e.g. 2010 vs 2010, 2016 vs 2016)?
Note that E+ is listing the subsurfaces as NFRC type "curtainwall" ...
Hope this helps, Adrià.