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I was too excited not to post this solution! It is low-tech excel solution but works. I get the name of degenrate surfaces by adding the extra warning object then use the error file to extract the names of these surfaces. Next step is copying the idf surfaces in the attached sheet and the formulas in there essentially look for the degenerate surfaces and clean up those surfaces (delete them) and one can copy the cleaned surfaces straight from excel back into the idf. Hope this comes handy for you all.
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