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It appears I have solved my own problem. I looked in the text file for surfaces with only 3 verticies, checked those verticies to see how close they were and if they were very close deleted the surface. It seems to have worked wonders!

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No.2 Revision

It appears I have solved my own problem. I looked in the text file for surfaces with only 3 verticies, checked those verticies to see how close they were and if they were very close deleted the surface. It seems to have worked wonders!wonders! Except for one surface, I have one surface left and I don't know how to find it. Would love other suggestions

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No.3 Revision

It appears I have solved my own problem. I looked in the text file for surfaces with only 3 verticies, checked those verticies to see how close they were and if they were very close deleted the surface. It seems to have worked wonders! Except for one surface, I have one surface left and I don't know how to find it. Would love other suggestions

Update: The degenerate surface has not stopped the simulation from running.