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I tested the following cases on Windows 7 64bit and did not see any difference in the run times:

OS 1.14, run from app - Elapsed Time=02hr 35min 43.61sec
OS 1.14, export idf, run in EP_Launch - Elapsed Time=02hr 35min 14.80sec
OS 2.0,  run from app - Elapsed Time=02hr 35min 48.78sec
OS 2.0, export idf, run in EP_Launch - Elapsed Time=02hr 36min 44.26sec