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I wouldn't worry about these lines. I think a larger issue is that many of the interior walls have the outside boundary condition set to "outside" (blue) instead of "surface" (green).

I wouldn't worry about these lines. I think a larger issue is that many of the interior walls have the outside boundary condition set to "outside" (blue) instead of "surface" (green).

This is a common problem so if you haven't already read the other question related to surface-intersecting and surface-matching by clicking the tags in your question.