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Are you looking to run multiple GenOpt instances or submitting your energy model evaluations using qsub?
I assume it's the later. GenOpt is multi-threaded so you may not need a batch processor. You can set a parameter in the config file to control the number of parallel simulations used (defaults to the number of cores available).
If you have a specialized need for batch simulations, you might have to write your own implementation in Java and integrate into GenOpt.