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matlab -nojvm -nodisplay -r 'run(FILENAME)'
Make sure your Matlab code is wrapped in a function
Running GenOpt on linux servers (no GUI): java -classpath ${GENOPT}/genopt.jar genopt.GenOpt optLinux.ini
Where $GENOPT is the path to your GenOpt directory.
If you want a GUI run: java -jar ${GENOPT}/genopt.jar optLinux.ini
Scott B.